ProtParCon 3.1 documentation

This documentation contains everything you need to know about ProtParCon.

Knowing ProtParCon

• ProtParCon at a glance
• Work-Flow of ProtParCon
• Walk-through of an example
• What just happened?
• What else?
• What’s next?

Installing ProtParCon

• Install ProtParCon
• Install ProtParCon to a virtual environment (recommended)
• Things that are good to know

Using ProtParCon

• Use ProtParCon in Python
  • Import ProtParCon
  • Align multiple sequences
  • Infer Maximum-Likelihood tree
  • Reconstruct ancestral states
  • Simulate protein sequences
  • Topology test
  • Identify molecular convergence in proteins
• Using ProtParCon in terminal
  • Check ProtParCon command-line toolsets
  • Using toolsets in terminal

Extending ProtParCon

• API Reference
  • msa
  • asr
  • imc
  • detect
  • sim
  • aut
  • mlt
  • utilities