Index

_

_clustal() (in module ProtParCon.msa) _codeml() (in module ProtParCon.asr) _evolver() (in module ProtParCon.sim) _evolver_parse() (in module ProtParCon.sim) _fastml() (in module ProtParCon.asr) _fasttree() (in module ProtParCon.mlt) _guess() (in module ProtParCon.asr) (in module ProtParCon.mlt) (in module ProtParCon.msa) (in module ProtParCon.sim) _iqtree() (in module ProtParCon.aut) (in module ProtParCon.mlt) _label() (in module ProtParCon.asr)

_load() (in module ProtParCon.imc) _mafft() (in module ProtParCon.msa) _muscle() (in module ProtParCon.msa) _pairing() (in module ProtParCon.imc) _parse() (in module ProtParCon.asr) _phyml() (in module ProtParCon.mlt) _raxml() (in module ProtParCon.asr) (in module ProtParCon.mlt) _seqgen() (in module ProtParCon.sim) _sequencing() (in module ProtParCon.imc) _tcoffee() (in module ProtParCon.msa) _tester() (in module ProtParCon.detect) _write() (in module ProtParCon.asr)

A

asr() (in module ProtParCon.asr)

aut() (in module ProtParCon.aut)

B

basename() (in module ProtParCon.utilities)

D

detect() (in module ProtParCon.detect)

F

file() (ProtParCon.utilities.Tree method)

I

imc() (in module ProtParCon.imc)

M

mlt() (in module ProtParCon.mlt) MODEL (in module ProtParCon.mlt)

modeling() (in module ProtParCon.utilities) msa() (in module ProtParCon.msa)

P

ProtParCon.asr (module) ProtParCon.aut (module) ProtParCon.detect (module)

ProtParCon.imc (module) ProtParCon.mlt (module) ProtParCon.msa (module) ProtParCon.sim (module)

S

sim() (in module ProtParCon.sim)

string() (ProtParCon.utilities.Tree method)

T

Tree (class in ProtParCon.utilities)

trim() (in module ProtParCon.utilities)