ProtParCon
3.1

Knowing ProtParCon

  • ProtParCon at a glance
  • Work-Flow of ProtParCon
  • Walk-through of an example
  • What just happened?
  • What else?
  • What’s next?

Installing ProtParCon

  • Install ProtParCon
  • Install ProtParCon to a virtual environment (recommended)
  • Things that are good to know

Using ProtParCon

  • Use ProtParCon in Python
    • Import ProtParCon
    • Align multiple sequences
    • Infer Maximum-Likelihood tree
    • Reconstruct ancestral states
    • Simulate protein sequences
    • Topology test
    • Identify molecular convergence in proteins
  • Using ProtParCon in terminal
    • Check ProtParCon command-line toolsets
    • Using toolsets in terminal

Extending ProtParCon

  • API Reference
    • msa
    • asr
    • imc
    • detect
    • sim
    • aut
    • mlt
    • utilities
ProtParCon
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